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Bra001245 protein (Brassica rapa) - STRING interaction network
"Bra001245" - AT3G07320 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001245AT3G07320 (E=2e-213) | glycosyl hydrolase family 17 protein (566 aa)    
Predicted Functional Partners:
Bra005377
AT2G34970 (E=0.0) | eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (725 aa)
     
  0.985
Bra041170
AT1G72340 (E=3e-031) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (73 aa)
     
  0.983
Bra039699
AT1G53880 (E=3e-176) | GTP binding / translation initiation factor (383 aa)
     
  0.983
Bra008029
AT1G72340 (E=2e-174) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (352 aa)
     
  0.983
Bra028196
AT5G38640 (E=5e-279) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (630 aa)
     
  0.980
Bra014165
AT1G48970 (E=1e-282) | GTP binding / translation initiation factor (657 aa)
     
  0.980
Bra020041
AT5G19485 (E=1e-235) | transferase (687 aa)
     
  0.980
Bra002240
AT5G19485 (E=1e-172) | transferase (413 aa)
     
  0.980
Bra017018
AT2G40290 (E=8e-158) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (429 aa)
     
  0.973
Bra009215
AT5G05470 (E=1e-007) EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | EIF2 ALPHA; RNA binding / translation initiation factor (377 aa)
     
  0.973
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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