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Bra001250 protein (Brassica rapa) - STRING interaction network
"Bra001250" - AT3G07420 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001250AT3G07420 (E=3e-156) NS2, ATNS2, SYNC2_ARATH, SYNC2 | NS2; asparagine-tRNA ligase (623 aa)    
Predicted Functional Partners:
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
  0.983
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
  0.983
Bra015031
AT1G48520 (E=1e-032) GATB | GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase (108 aa)
   
  0.909
Bra001942
AT1G48520 (E=2e-241) GATB | GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase (531 aa)
   
  0.909
Bra009383
AT5G09420 (E=2e-282) ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (923 aa)
   
  0.893
Bra000791
AT4G04350 (E=0.0) EMB2369 | EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (956 aa)
   
  0.881
Bra031675
AT1G09620 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (1156 aa)
   
  0.881
Bra020007
AT1G09620 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (1048 aa)
   
  0.881
Bra024759
AT1G25350 (E=2e-197) OVA9 | OVA9 (ovule abortion 9); glutamine-tRNA ligase (727 aa)
   
  0.866
Bra031917
AT5G64440 (E=7e-285) AtFAAH | AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase); N-(long-chain-acyl)ethanolamine deacylase/ amidase (613 aa)
   
  0.842
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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