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Bra001255 protein (Brassica rapa) - STRING interaction network
"Bra001255" - AT5G48380 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001255AT5G48380 (E=3e-049) | leucine-rich repeat family protein / protein kinase family protein (259 aa)    
Predicted Functional Partners:
Bra005918
AT5G06860 (E=5e-066) PGIP1, ATPGIP1 | PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding (205 aa)
   
          0.525
Bra027477
AT1G56140 (E=9e-041) | leucine-rich repeat family protein / protein kinase family protein (193 aa)
   
          0.524
Bra027476
AT1G56130 (E=3e-086) | leucine-rich repeat family protein / protein kinase family protein (293 aa)
   
          0.515
Bra014208
AT1G49750 (E=7e-157) | leucine-rich repeat family protein (475 aa)
   
          0.513
Bra021024
AT1G71400 (E=1e-074) AtRLP12 | AtRLP12 (Receptor Like Protein 12); protein binding (292 aa)
   
          0.508
Bra035460
AT1G58190 (E=1e-069) AtRLP9 | AtRLP9 (Receptor Like Protein 9); protein binding (340 aa)
   
          0.455
Bra016905
AT1G48480 (E=2e-032) RKL1 | RKL1; ATP binding / kinase/ protein serine/threonine kinase (169 aa)
   
          0.423
Bra020974
AT3G56370 (E=4e-030) | leucine-rich repeat transmembrane protein kinase, putative (145 aa)
   
          0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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