STRINGSTRING
Bra001261 protein (Brassica rapa) - STRING interaction network
"Bra001261" - AT3G07600 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001261AT3G07600 (E=3e-029) | heavy-metal-associated domain-containing protein (131 aa)    
Predicted Functional Partners:
Bra037460
AT5G48800 (E=3e-269) | phototropic-responsive NPH3 family protein (620 aa)
           
  0.408
Bra033365
AT1G03010 (E=2e-301) | phototropic-responsive NPH3 family protein (630 aa)
           
  0.408
Bra032564
AT1G03010 (E=3e-311) | phototropic-responsive NPH3 family protein (638 aa)
           
  0.408
Bra040689
AT3G53140 (E=4e-188) | O-diphenol-O-methyl transferase, putative (359 aa)
           
  0.406
Bra039542
AT4G15510 (E=2e-100) | photosystem II reaction center PsbP family protein (269 aa)
           
  0.406
Bra038081
AT4G15510 (E=4e-105) | photosystem II reaction center PsbP family protein (267 aa)
           
  0.406
Bra027586
AT5G45080 (E=2e-062) AtPP2-A6 | AtPP2-A6 (Phloem protein 2-A6); carbohydrate binding (306 aa)
           
  0.406
Bra016051
AT1G72530 (E=7e-088) | plastid developmental protein DAG, putative (183 aa)
           
  0.406
Bra003876
AT1G72530 (E=3e-085) | plastid developmental protein DAG, putative (190 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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