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Bra001262 protein (Brassica rapa) - STRING interaction network
"Bra001262" - AT3G07630 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001262AT3G07630 (E=3e-177) ADT2 | ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase ; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (379 aa)    
Predicted Functional Partners:
Bra035662
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (899 aa)
   
 
  0.968
Bra011921
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (937 aa)
   
 
  0.968
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
   
 
  0.846
Bra036217
AT3G29200 (E=6e-128) CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase (329 aa)
     
  0.837
Bra033090
AT3G29200 (E=1e-027) CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase (184 aa)
     
  0.837
Bra028560
AT5G10870 (E=2e-110) ATCM2 | ATCM2 (chorismate mutase 2); chorismate mutase (259 aa)
     
  0.837
Bra025383
AT3G29200 (E=7e-142) CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase (335 aa)
     
  0.837
Bra004376
AT1G69370 (E=5e-106) CM3, cm-3 | CM3 (chorismate mutase 3); chorismate mutase (337 aa)
     
  0.837
Bra004001
AT1G69370 (E=4e-138) CM3, cm-3 | CM3 (chorismate mutase 3); chorismate mutase (321 aa)
     
  0.837
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
 
   
  0.835
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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