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Bra001264 protein (Brassica rapa) - STRING interaction network
"Bra001264" - AT3G07650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001264AT3G07650 (E=2e-152) COL9 | COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding (351 aa)    
Predicted Functional Partners:
Bra019243
AT4G24160 (E=2e-207) | hydrolase, alpha/beta fold family protein (400 aa)
           
  0.424
Bra017137
AT2G38110 (E=9e-251) ATGPAT6, GPAT6 | GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase (501 aa)
           
  0.424
Bra013770
AT4G24160 (E=6e-213) | hydrolase, alpha/beta fold family protein (407 aa)
           
  0.424
Bra008812
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (666 aa)
           
  0.424
Bra005137
AT2G38110 (E=2e-251) ATGPAT6, GPAT6 | GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase (501 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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