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Bra001267 protein (Brassica rapa) - STRING interaction network
"Bra001267" - AT3G07810 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001267AT3G07810 (E=3e-128) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (471 aa)    
Predicted Functional Partners:
Bra014881
AT1G30460 (E=3e-141) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (580 aa)
     
 
  0.833
Bra010767
AT1G30460 (E=2e-211) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (630 aa)
     
 
  0.833
Bra035636
AT5G56930 (E=2e-111) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (642 aa)
       
 
  0.830
Bra002780
AT5G56930 (E=5e-023) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (132 aa)
       
 
  0.830
Bra041017
AT1G53650 (E=3e-118) CID8 | CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding (291 aa)
       
  0.768
Bra038139
AT1G53650 (E=3e-130) CID8 | CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding (314 aa)
       
  0.768
Bra037991
AT1G55310 (E=3e-018) SR33, ATSCL33, SCL33 | SR33; RNA binding / protein binding (247 aa)
       
  0.768
Bra037923
AT4G10610 (E=1e-155) RBP37, ATRBP37, CID12 | CID12; RNA binding (331 aa)
       
  0.768
Bra036515
AT5G24440 (E=4e-106) CID13 | CID13 (CTC-Interacting Domain 13); RNA binding / nucleic acid binding / nucleotide binding (329 aa)
       
  0.768
Bra036514
AT5G24440 (E=9e-041) CID13 | CID13 (CTC-Interacting Domain 13); RNA binding / nucleic acid binding / nucleotide binding (325 aa)
       
  0.768
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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