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Bra001269 protein (Brassica rapa) - STRING interaction network
"Bra001269" - AT3G07840 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001269AT3G07840 (E=5e-193) | polygalacturonase, putative / pectinase, putative (397 aa)    
Predicted Functional Partners:
Bra022440
AT3G19620 (E=1e-244) | glycosyl hydrolase family 3 protein (771 aa)
         
  0.919
Bra035579
AT5G55590 (E=2e-150) QRT1 | QRT1 (QUARTET 1); pectinesterase (378 aa)
       
  0.909
Bra002891
AT5G55590 (E=1e-097) QRT1 | QRT1 (QUARTET 1); pectinesterase (409 aa)
       
  0.909
Bra033083
AT3G29090 (E=1e-184) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.908
Bra025376
AT3G29090 (E=2e-186) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.908
Bra036278
AT4G02330 (E=6e-295) ATPMEPCRB | ATPMEPCRB; pectinesterase (572 aa)
       
  0.907
Bra030511
AT1G02810 (E=8e-308) | pectinesterase family protein (576 aa)
       
  0.907
Bra021403
AT2G47550 (E=1e-279) | pectinesterase family protein (563 aa)
       
  0.907
Bra004447
AT2G47550 (E=5e-281) | pectinesterase family protein (562 aa)
       
  0.907
Bra039419
AT3G05620 (E=3e-267) | pectinesterase family protein (539 aa)
       
  0.888
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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