STRINGSTRING
Bra001271 protein (Brassica rapa) - STRING interaction network
"Bra001271" - AT3G07860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001271AT3G07860 (E=8e-075) | unknown protein (170 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
 
    0.873
Bra032625
AT4G07950 (E=2e-050) | DNA-directed RNA polymerase III family protein (168 aa)
     
 
  0.626
Bra024774.1-P
AT4G07950 (E=6e-051) | DNA-directed RNA polymerase III family protein (103 aa)
     
 
  0.626
Bra006662
AT1G01210 (E=1e-041) | DNA-directed RNA polymerase III family protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (103 aa)
     
 
  0.626
Bra014389
AT2G47640 (E=1e-055) | small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (105 aa)
     
 
    0.620
Bra007706
AT3G62840 (E=2e-052) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Like-Sm ribonucleoprotein, core (InterPro-IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro-IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro-IPR010920); BEST Arabidopsis thaliana protein match is- small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR-AT2G47640. [...] (125 aa)
     
 
    0.620
Bra010295
AT4G30220 (E=6e-046) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
     
 
    0.619
Bra010295.1-P
AT4G30220 (E=6e-046) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (88 aa)
     
 
    0.619
Bra018487
AT5G20160 (E=3e-053) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (128 aa)
     
 
    0.616
Bra000781
AT5G20160 (E=5e-054) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (128 aa)
     
 
    0.616
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]