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Bra001273 protein (Brassica rapa) - STRING interaction network
"Bra001273" - AT3G07870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001273AT3G07870 (E=1e-193) | F-box family protein (409 aa)    
Predicted Functional Partners:
Bra026609
AT2G02230 (E=4e-106) AtPP2-B1 | AtPP2-B1 (Phloem protein 2-B1); carbohydrate binding (334 aa)
           
  0.465
Bra026608
AT2G02240 (E=9e-114) MEE66 | MEE66 (maternal effect embryo arrest 66) (278 aa)
           
  0.465
Bra026606
AT2G02240 (E=3e-102) MEE66 | MEE66 (maternal effect embryo arrest 66) (349 aa)
           
  0.465
Bra026604
AT2G02240 (E=1e-114) MEE66 | MEE66 (maternal effect embryo arrest 66) (322 aa)
           
  0.465
Bra026603
AT2G02360 (E=3e-090) AtPP2-B10 | AtPP2-B10 (Phloem protein 2-B10); carbohydrate binding (291 aa)
           
  0.465
Bra024823
AT2G02240 (E=1e-118) MEE66 | MEE66 (maternal effect embryo arrest 66) (286 aa)
           
  0.465
Bra024822
AT2G02360 (E=1e-087) AtPP2-B10 | AtPP2-B10 (Phloem protein 2-B10); carbohydrate binding (218 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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