STRINGSTRING
Bra001276 protein (Brassica rapa) - STRING interaction network
"Bra001276" - AT3G07910 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001276AT3G07910 (E=2e-018) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Reactive oxygen species modulator 1 (InterPro-IPR018450); Has 146 Blast hits to 146 proteins in 65 species- Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 6; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink). (71 aa)    
Predicted Functional Partners:
Bra028272
AT5G51740 (E=7e-202) | peptidase M48 family protein (431 aa)
       
      0.823
Bra037363
AT4G01320 (E=5e-218) ATSTE24, STE24 | ATSTE24; endopeptidase/ metalloendopeptidase (412 aa)
       
      0.562
Bra025250
AT3G27110 (E=3e-172) | peptidase M48 family protein (342 aa)
       
      0.562
Bra000954
AT4G01320 (E=2e-221) ATSTE24, STE24 | ATSTE24; endopeptidase/ metalloendopeptidase (424 aa)
       
      0.562
Bra020633
AT5G16710 (E=5e-033) DHAR3 | DHAR3 (dehydroascorbate reductase 1); glutathione dehydrogenase (ascorbate) (350 aa)
     
   
  0.482
Bra030393
AT1G52300 (E=2e-051) | 60S ribosomal protein L37 (RPL37B) ; Binds to the 23S rRNA (95 aa)
     
   
  0.476
Bra027192
AT1G52300 (E=4e-051) | 60S ribosomal protein L37 (RPL37B) ; Binds to the 23S rRNA (96 aa)
     
   
  0.476
Bra018960
AT1G52300 (E=9e-050) | 60S ribosomal protein L37 (RPL37B) (426 aa)
     
   
  0.476
Bra012730
AT1G52300 (E=1e-028) | 60S ribosomal protein L37 (RPL37B) ; Binds to the 23S rRNA (99 aa)
     
   
  0.476
Bra001624
AT1G52300 (E=6e-049) | 60S ribosomal protein L37 (RPL37B) (273 aa)
     
   
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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