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Bra001281 protein (Brassica rapa) - STRING interaction network
"Bra001281" - AT3G08010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001281AT3G08010 (E=8e-183) ATAB2 | ATAB2; RNA binding (375 aa)    
Predicted Functional Partners:
Bra027694
AT1G64355 (E=6e-078) | unknown protein (196 aa)
   
        0.657
Bra028418
AT5G38660 (E=2e-113) APE1 | APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) (288 aa)
   
        0.646
Bra022262
AT3G17930 (E=2e-062) | unknown protein (188 aa)
   
        0.590
Bra038863
AT3G50820 (E=3e-179) PSBO2, PSBO-2, OEC33 | PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding (333 aa)
   
        0.581
Bra037164
AT5G66570 (E=1e-184) PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding (332 aa)
   
        0.581
Bra031813
AT5G66570 (E=7e-183) PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding (332 aa)
   
        0.581
Bra012083
AT5G66570 (E=2e-184) PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding (332 aa)
   
        0.581
Bra017790
AT5G66570 (E=7e-131) PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding (319 aa)
   
        0.579
Bra023176
AT1G31330 (E=2e-100) PSAF | PSAF (photosystem I subunit F) (220 aa)
   
   
  0.572
Bra038418
AT1G31330 (E=6e-090) PSAF | PSAF (photosystem I subunit F) (213 aa)
   
   
  0.571
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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