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Bra001283 protein (Brassica rapa) - STRING interaction network
"Bra001283" - AT3G08040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001283AT3G08040 (E=3e-196) FRD3, MAN1 | FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter (529 aa)    
Predicted Functional Partners:
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
           
  0.563
Bra032640
AT1G01580 (E=0.0) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (725 aa)
           
  0.551
Bra015337
AT1G04640 (E=6e-121) LIP2 | LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase (378 aa)
       
    0.549
Bra020463
AT5G57130 (E=1e-289) | protein binding (866 aa)
         
  0.543
Bra013419
AT4G19690 (E=2e-159) IRT1 | IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (345 aa)
           
  0.543
Bra012534
AT4G19690 (E=5e-159) IRT1 | IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (345 aa)
           
  0.543
Bra020272
AT5G59980 (E=9e-190) | RNase P subunit p30 family protein (749 aa)
     
 
    0.542
Bra002517
AT5G59980 (E=4e-155) | RNase P subunit p30 family protein (627 aa)
     
 
    0.542
Bra040861
AT3G23560 (E=4e-232) ALF5 | ALF5 (ABERRANT LATERAL ROOT FORMATION 5); antiporter/ drug transporter/ transporter (472 aa)
           
  0.526
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
         
  0.516
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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