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Bra001285 protein (Brassica rapa) - STRING interaction network
"Bra001285" - AT3G08505 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001285AT3G08505 (E=3e-116) | zinc finger (CCCH-type/C3HC4-type RING finger) family protein (287 aa)    
Predicted Functional Partners:
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
     
 
    0.669
Bra031783
AT1G11800 (E=2e-176) | endonuclease/exonuclease/phosphatase family protein (420 aa)
       
      0.594
Bra036687
AT2G20300 (E=0.0) ALE2 | ALE2 (Abnormal Leaf Shape 2); kinase (736 aa)
           
  0.434
Bra036461
AT2G20300 (E=0.0) ALE2 | ALE2 (Abnormal Leaf Shape 2); kinase (740 aa)
           
  0.434
Bra031115
AT2G20300 (E=0.0) ALE2 | ALE2 (Abnormal Leaf Shape 2); kinase (738 aa)
           
  0.434
Bra040093
AT4G16760 (E=0.0) ACX1, ATACX1 | ACX1 (ACYL-COA OXIDASE 1); acyl-CoA oxidase (664 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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