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Bra001286 protein (Brassica rapa) - STRING interaction network
"Bra001286" - AT3G08530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001286AT3G08530 (E=0.0) | clathrin heavy chain, putative (1484 aa)    
Predicted Functional Partners:
Bra017929
AT1G21570 (E=2e-227) | zinc finger (CCCH-type) family protein (1001 aa)
     
  0.978
Bra016455
AT1G20760 (E=5e-214) | calcium-binding EF hand family protein (1135 aa)
     
  0.978
Bra016413
AT1G21630 (E=0.0) | calcium-binding EF hand family protein (1140 aa)
     
  0.978
Bra017933
AT1G21630 (E=5e-305) | calcium-binding EF hand family protein (1233 aa)
     
  0.978
Bra000742
AT4G11360 (E=1e-058) RHA1B | RHA1B; protein binding / zinc ion binding (308 aa)
     
  0.977
Bra032375
AT1G30280 (E=8e-158) | heat shock protein binding (433 aa)
     
  0.969
Bra020913
AT4G12770 (E=2e-236) | heat shock protein binding (836 aa)
     
  0.969
Bra015866
AT1G75100 (E=6e-078) JAC1 | JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding (638 aa)
     
  0.969
Bra015852
AT1G75310 (E=0.0) AUL1 | AUL1; heat shock protein binding (1485 aa)
     
  0.969
Bra014876
AT1G30280 (E=1e-090) | heat shock protein binding (434 aa)
     
  0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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