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Bra001287 protein (Brassica rapa) - STRING interaction network
"Bra001287" - AT3G10180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001287AT3G10180 (E=0.0) | kinesin motor protein-related (1217 aa)    
Predicted Functional Partners:
Bra038307
AT1G69400 (E=6e-145) | transducin family protein / WD-40 repeat family protein (378 aa)
     
  0.969
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
 
  0.921
Bra025176
AT3G25980 (E=3e-024) | mitotic spindle checkpoint protein, putative (MAD2) (95 aa)
     
  0.913
Bra017340
AT3G25980 (E=2e-112) | mitotic spindle checkpoint protein, putative (MAD2) (209 aa)
     
  0.913
Bra038220
AT3G19590 (E=1e-181) | WD-40 repeat family protein / mitotic checkpoint protein, putative (340 aa)
     
  0.863
Bra009117
AT5G05510 (E=1e-091) | protein kinase-related (453 aa)
     
  0.862
Bra005485
AT2G33560 (E=2e-163) | spindle checkpoint protein-related (374 aa)
     
  0.862
Bra014226
AT1G49910 (E=9e-183) | WD-40 repeat family protein / mitotic checkpoint protein, putative (339 aa)
     
  0.861
Bra031135
AT2G20635 (E=6e-112) | ATP binding / protein kinase/ protein serine/threonine kinase (475 aa)
     
  0.832
Bra015240
AT2G33560 (E=2e-071) | spindle checkpoint protein-related (232 aa)
     
  0.832
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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