STRINGSTRING
Bra001288 protein (Brassica rapa) - STRING interaction network
"Bra001288" - AT3G10140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001288AT3G10140 (E=6e-168) RECA3 | RECA3 (recA homolog 3); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (390 aa)    
Predicted Functional Partners:
Bra037060
AT4G00020 (E=0.0) MEE43, EDA20, BRCA2(IV), BRCA2A | protein binding / single-stranded DNA binding (1158 aa)
     
  0.976
Bra023796
AT3G22880 (E=6e-171) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (332 aa)
     
  0.975
Bra004897
AT2G45280 (E=1e-151) ATRAD51C, RAD51C | ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding (370 aa)
     
  0.975
Bra001890
AT3G22880 (E=3e-030) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (84 aa)
     
  0.975
Bra037372
AT5G57450 (E=2e-052) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding (259 aa)
       
  0.974
Bra006820
AT5G57450 (E=3e-126) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding (331 aa)
       
  0.974
Bra005674
AT4G00020 (E=3e-211) MEE43, EDA20, BRCA2(IV), BRCA2A | protein binding / single-stranded DNA binding (1060 aa)
     
  0.971
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
 
  0.960
Bra013077
AT2G16390 (E=0.0) DRD1, CHR35, DMS1 | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding (1459 aa)
   
 
  0.949
Bra019188
AT4G25120 (E=4e-300) | ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase (1140 aa)
     
 
  0.949
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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