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Bra001289 protein (Brassica rapa) - STRING interaction network
"Bra001289" - AT3G10050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001289AT3G10050 (E=6e-266) OMR1 | OMR1 (L-O-METHYLTHREONINE RESISTANT 1); L-threonine ammonia-lyase (603 aa)    
Predicted Functional Partners:
BrALS3
AT3G48560 (E=0.0) CSR1, ALS, AHAS, TZP5, IMR1 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1); acetolactate synthase/ pyruvate decarboxylase (652 aa)
 
  0.975
Bra035169
AT1G80560 (E=2e-212) | 3-isopropylmalate dehydrogenase, chloroplast, putative ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (406 aa)
   
 
  0.953
Bra023559
AT5G16290 (E=2e-238) | acetolactate synthase small subunit, putative (475 aa)
   
 
  0.953
Bra021745
AT2G31810 (E=3e-227) | acetolactate synthase small subunit, putative (488 aa)
   
 
  0.953
Bra008463
AT1G80560 (E=2e-213) | 3-isopropylmalate dehydrogenase, chloroplast, putative ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (406 aa)
   
 
  0.953
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
   
  0.951
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
   
  0.951
Bra010315
AT4G29840 (E=1e-271) MTO2, TS | MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase (525 aa)
   
 
  0.950
Bra036724
AT4G29840 (E=2e-255) MTO2, TS | MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase (524 aa)
   
 
  0.942
Bra011140
AT4G29840 (E=8e-282) MTO2, TS | MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase (524 aa)
   
 
  0.942
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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