STRINGSTRING
Bra001290 protein (Brassica rapa) - STRING interaction network
"Bra001290" - AT3G10040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001290AT3G10040 (E=2e-141) | transcription factor (416 aa)    
Predicted Functional Partners:
Bra030919
AT3G14230 (E=3e-061) RAP2.2 | RAP2.2; DNA binding / transcription factor (306 aa)
       
 
  0.628
Bra027355
AT3G14230 (E=7e-134) RAP2.2 | RAP2.2; DNA binding / transcription factor (379 aa)
       
 
  0.619
Bra021543
AT3G14230 (E=4e-126) RAP2.2 | RAP2.2; DNA binding / transcription factor (365 aa)
       
 
  0.615
Bra001541
AT3G14230 (E=8e-107) RAP2.2 | RAP2.2; DNA binding / transcription factor (352 aa)
       
      0.533
Bra005127
AT2G38250 (E=3e-075) | DNA-binding protein-related (292 aa)
           
  0.483
Bra000046
AT2G38250 (E=3e-073) | DNA-binding protein-related (294 aa)
           
  0.483
Bra023175
AT1G31310 (E=3e-061) | hydroxyproline-rich glycoprotein family protein (387 aa)
           
  0.418
Bra014906
AT1G31310 (E=3e-117) | hydroxyproline-rich glycoprotein family protein (386 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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