STRINGSTRING
Bra001298 protein (Brassica rapa) - STRING interaction network
"Bra001298" - AT3G09800 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001298AT3G09800 (E=1e-091) | protein binding (184 aa)    
Predicted Functional Partners:
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
  0.996
Bra011848
AT1G62020 (E=1e-278) | coatomer protein complex, subunit alpha, putative (733 aa)
     
  0.994
Bra005835
AT5G05010 (E=2e-222) | clathrin adaptor complexes medium subunit-related (896 aa)
     
  0.979
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
  0.979
Bra034627
AT4G34450 (E=9e-301) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (902 aa)
     
  0.979
Bra011535
AT4G34450 (E=0.0) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (886 aa)
     
  0.979
Bra001970
AT4G34450 (E=0.0) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (887 aa)
     
  0.979
Bra028774
AT5G05010 (E=5e-235) | clathrin adaptor complexes medium subunit-related (524 aa)
     
  0.979
Bra009404
AT5G05010 (E=3e-220) | clathrin adaptor complexes medium subunit-related (609 aa)
     
  0.979
Bra038070
AT3G15980 (E=0.0) | coatomer protein complex, subunit beta 2 (beta prime), putative (910 aa)
     
  0.979
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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