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Bra001303 protein (Brassica rapa) - STRING interaction network
"Bra001303" - AT3G09590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001303AT3G09590 (E=5e-073) | pathogenesis-related protein, putative (192 aa)    
Predicted Functional Partners:
Bra029776
AT3G09580 (E=4e-193) | amine oxidase family protein (473 aa)
           
  0.574
Bra037365
AT4G01280 (E=2e-084) | myb family transcription factor (339 aa)
           
  0.541
Bra002328
AT5G20740 (E=1e-080) | invertase/pectin methylesterase inhibitor family protein (203 aa)
           
  0.502
Bra029711
AT3G08690 (E=2e-081) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (310 aa)
       
 
  0.492
Bra024952
AT5G47240 (E=3e-170) atnudt8 | atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8); hydrolase (363 aa)
           
  0.472
Bra003117
AT5G52660 (E=1e-116) | myb family transcription factor (306 aa)
           
  0.454
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
     
 
  0.407
Bra034308
AT2G26570 (E=6e-192) | unknown protein (647 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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