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Bra001314 protein (Brassica rapa) - STRING interaction network
"Bra001314" - AT3G09350 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001314AT3G09350 (E=2e-167) | armadillo/beta-catenin repeat family protein (358 aa)    
Predicted Functional Partners:
Bra038496
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (846 aa)
     
  0.979
Bra012696
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (869 aa)
     
  0.979
Bra041089
AT2G44440 (E=8e-039) | emsy N terminus domain-containing protein / ENT domain-containing protein (300 aa)
     
  0.612
Bra039679
AT1G79930 (E=0.0) HSP91 | HSP91; ATP binding (818 aa)
     
  0.612
Bra019840
AT1G11660 (E=0.0) | heat shock protein, putative (761 aa)
     
  0.612
Bra016825
AT1G11660 (E=7e-062) | heat shock protein, putative (255 aa)
     
  0.612
Bra014713
AT1G79920 (E=0.0) | ATP binding (814 aa)
     
  0.612
Bra033128
AT4G11790 (E=3e-073) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (361 aa)
       
      0.612
Bra014867
AT4G11790 (E=2e-064) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (394 aa)
       
      0.612
Bra012994
AT5G60940 (E=5e-171) | transducin family protein / WD-40 repeat family protein (447 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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