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Bra001316 protein (Brassica rapa) - STRING interaction network
"Bra001316" - AT3G09320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001316AT3G09320 (E=6e-152) | zinc finger (DHHC type) family protein (286 aa)    
Predicted Functional Partners:
Bra039185
AT2G23150 (E=6e-240) NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (1300 aa)
     
 
  0.525
Bra030036
AT1G79940 (E=1e-026) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (180 aa)
     
 
  0.514
Bra040513
AT3G01400 (E=3e-117) | armadillo/beta-catenin repeat family protein (263 aa)
     
 
  0.513
Bra040374
AT3G07360 (E=8e-150) PUB9, ATPUB9 | PUB9 (PLANT U-BOX 9) (451 aa)
     
 
  0.513
Bra038578
AT1G61350 (E=2e-027) | armadillo/beta-catenin repeat family protein (76 aa)
     
 
  0.513
Bra038470
AT4G16490 (E=2e-229) | binding (468 aa)
     
 
  0.513
Bra037117
AT5G67340 (E=1e-156) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein (734 aa)
     
 
  0.513
Bra035665
AT2G28830 (E=2e-261) | binding / structural constituent of ribosome / ubiquitin-protein ligase (652 aa)
     
 
  0.513
Bra033229
AT1G01830 (E=1e-254) | armadillo/beta-catenin repeat family protein (611 aa)
     
 
  0.513
Bra032203
AT1G44120 (E=0.0) | C2 domain-containing protein / armadillo/beta-catenin repeat family protein (2108 aa)
     
 
  0.513
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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