STRINGSTRING
Bra001319 protein (Brassica rapa) - STRING interaction network
"Bra001319" - AT3G09280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001319AT3G09280 (E=2e-032) | unknown protein (111 aa)    
Predicted Functional Partners:
Bra013645
AT4G22760 (E=2e-268) | pentatricopeptide (PPR) repeat-containing protein (583 aa)
           
  0.606
Bra032646
AT1G01650 (E=6e-283) | aspartic-type endopeptidase/ peptidase (539 aa)
           
  0.574
Bra019359
AT4G22770 (E=1e-135) | DNA-binding family protein (329 aa)
           
  0.504
Bra027793
AT1G63690 (E=3e-281) | protease-associated (PA) domain-containing protein (539 aa)
           
  0.483
Bra037399
AT4G00950 (E=5e-090) MEE47 | MEE47 (maternal effect embryo arrest 47); transcription factor (288 aa)
           
  0.477
Bra034063
AT3G09290 (E=5e-058) TAC1 | TAC1 (TELOMERASE ACTIVATOR1); nucleic acid binding / transcription factor/ zinc ion binding (173 aa)
           
  0.455
Bra026305
AT4G27810 (E=9e-086) | unknown protein (194 aa)
           
  0.448
Bra036635
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (702 aa)
           
  0.406
Bra027004
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (697 aa)
           
  0.406
Bra000978
AT4G00170 (E=2e-086) | vesicle-associated membrane family protein / VAMP family protein (236 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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