STRINGSTRING
Bra001325 protein (Brassica rapa) - STRING interaction network
"Bra001325" - AT3G09150 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001325AT3G09150 (E=1e-157) HY2, GUN3 | HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin-ferredoxin oxidoreductase (323 aa)    
Predicted Functional Partners:
Bra040771
AT2G26670 (E=6e-134) ATHO1, HO1, TED4, GUN2, HY6 | TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing) (281 aa)
       
  0.967
Bra012054
AT2G26670 (E=4e-130) ATHO1, HO1, TED4, GUN2, HY6 | TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing) (280 aa)
       
  0.952
Bra023283
AT2G26670 (E=9e-064) ATHO1, HO1, TED4, GUN2, HY6 | TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing) (293 aa)
   
 
  0.894
Bra027878
AT1G58300 (E=1e-098) ho4 | ho4 (HEME OXYGENASE 4); heme oxygenase (decyclizing)/ oxidoreductase (289 aa)
       
  0.724
Bra034284
AT2G25930 (E=3e-105) ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (602 aa)
       
 
  0.639
Bra031274
AT3G21320 (E=1e-210) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR-AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (536 aa)
       
 
  0.619
Bra007774
AT2G25930 (E=2e-085) ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (592 aa)
       
 
  0.619
Bra031471
AT1G60950 (E=3e-057) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (148 aa)
       
 
  0.618
Bra027109
AT1G60950 (E=1e-055) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (148 aa)
       
 
  0.618
Bra023887
AT3G21320 (E=2e-100) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR-AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (518 aa)
       
      0.591
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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