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Bra001335 protein (Brassica rapa) - STRING interaction network
"Bra001335" - AT3G08950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001335AT3G08950 (E=3e-148) | electron transport SCO1/SenC family protein (316 aa)    
Predicted Functional Partners:
Bra002848
AT5G56090 (E=5e-219) COX15 | COX15 (cytochrome c oxidase 15) (454 aa)
   
 
  0.827
Bra030501
AT1G02410 (E=3e-131) | cytochrome c oxidase assembly protein CtaG / Cox11 family (281 aa)
 
 
  0.720
Bra032603
AT1G02410 (E=2e-132) | cytochrome c oxidase assembly protein CtaG / Cox11 family (286 aa)
 
 
  0.718
Bra033325
AT1G02410 (E=3e-097) | cytochrome c oxidase assembly protein CtaG / Cox11 family (188 aa)
 
 
  0.709
Bra022259
AT3G17910 (E=3e-163) SURF1 | SURF1 (SURFEIT 1) (349 aa)
   
   
  0.705
Bra021283
AT3G17910 (E=3e-153) SURF1 | SURF1 (SURFEIT 1) (340 aa)
   
   
  0.705
Bra037646
AT2G44520 (E=3e-169) COX10 | COX10 (cytochrome c oxidase 10); prenyltransferase/ protoheme IX farnesyltransferase (424 aa)
         
  0.698
Bra004842
AT2G44520 (E=4e-081) COX10 | COX10 (cytochrome c oxidase 10); prenyltransferase/ protoheme IX farnesyltransferase (282 aa)
         
  0.698
Bra040902
AT5G21100 (E=3e-271) | L-ascorbate oxidase, putative (572 aa)
         
  0.640
Bra039389
AT3G13400 (E=2e-287) sks13 | sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase (520 aa)
         
  0.640
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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