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Bra001336 protein (Brassica rapa) - STRING interaction network
"Bra001336" - AT3G08930 in Brassica rapa
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
Bra001336AT3G08930 (E=2e-266) | LOCATED IN- endomembrane system; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- LMBR1-like conserved region (InterPro-IPR006876); BEST Arabidopsis thaliana protein match is- LMBR1 integral membrane family protein (TAIR-AT5G01460.1); Has 250 Blast hits to 249 proteins in 81 species- Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 39; Plants - 31; Viruses - 0; Other Eukaryotes - 73 (source- NCBI BLink). (509 aa)    
Predicted Functional Partners:
Bra040754
AT4G12650 (E=0.0) | LOCATED IN- integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nonaspanin (TM9SF) (InterPro-IPR004240); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G35160.1); Has 983 Blast hits to 980 proteins in 161 species- Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228; Viruses - 0; Other Eukaryotes - 177 (source- NCBI BLink). (689 aa)
           
  0.509
Bra036714
AT5G35160 (E=0.0) | LOCATED IN- integral to membrane, Golgi apparatus; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nonaspanin (TM9SF) (InterPro-IPR004240); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G12650.1); Has 1053 Blast hits to 1004 proteins in 163 species- Archae - 0; Bacteria - 0; Metazoa - 478; Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes - 182 (source- NCBI BLink). (657 aa)
           
  0.509
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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