STRINGSTRING
Bra001342 protein (Brassica rapa) - STRING interaction network
"Bra001342" - AT3G08850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001342AT3G08850 (E=0.0) RAPTOR1B, ATRAPTOR1B, RAPTOR1 | RAPTOR1; nucleotide binding / protein binding (1358 aa)    
Predicted Functional Partners:
Bra039647
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2452 aa)
     
  0.987
Bra018828
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2435 aa)
     
  0.987
Bra015251
AT5G40820 (E=8e-032) ATRAD3, ATR, ATATR | ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (3604 aa)
     
  0.985
Bra014234
AT1G50030 (E=1e-026) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (79 aa)
     
  0.985
Bra031226
AT3G18140 (E=4e-082) | transducin family protein / WD-40 repeat family protein (331 aa)
       
  0.976
Bra040057
AT3G08730 (E=3e-230) ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 | PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase (460 aa)
     
  0.973
Bra040056
AT3G08730 (E=7e-118) ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 | PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase (407 aa)
     
  0.973
Bra029713
AT3G08730 (E=2e-232) ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 | PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase (461 aa)
     
  0.973
Bra029712
AT3G08720 (E=1e-174) ATPK19, ATS6K2, S6K2, ATPK2 | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase/ protein kinase (452 aa)
     
  0.973
Bra022283
AT3G18140 (E=2e-102) | transducin family protein / WD-40 repeat family protein (244 aa)
       
  0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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