STRINGSTRING
Bra001347 protein (Brassica rapa) - STRING interaction network
"Bra001347" - AT3G08690 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001347AT3G08690 (E=4e-085) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (148 aa)    
Predicted Functional Partners:
Bra037089
AT3G52560 (E=1e-059) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (184 aa)
     
  0.973
Bra033422
AT3G52560 (E=7e-078) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (146 aa)
     
  0.973
Bra024574
AT1G23260 (E=3e-084) MMZ1, UEV1A | MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase (158 aa)
     
  0.973
Bra016355
AT1G23260 (E=4e-085) MMZ1, UEV1A | MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase (158 aa)
     
  0.973
Bra007932
AT1G70660 (E=5e-080) MMZ2, UEV1B | MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase (159 aa)
     
  0.973
Bra006933
AT3G52560 (E=3e-079) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (146 aa)
     
  0.973
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
       
  0.962
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
       
  0.962
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
       
  0.962
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.959
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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