STRINGSTRING
Bra001351 protein (Brassica rapa) - STRING interaction network
"Bra001351" - AT3G08610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001351AT3G08610 (E=6e-024) | unknown protein (65 aa)    
Predicted Functional Partners:
Bra026590
AT2G02510 (E=3e-038) | unknown protein (72 aa)
     
   
  0.659
Bra032216
AT1G47260 (E=6e-141) APFI, GAMMA CA2 | GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (276 aa)
       
 
  0.595
Bra026218
AT1G14450 (E=1e-035) | unknown protein (74 aa)
     
   
  0.572
Bra000462
AT2G47810 (E=8e-075) NF-YB5 | NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5); transcription factor (156 aa)
           
  0.532
Bra024437
AT5G67590 (E=4e-075) FRO1 | FRO1 (FROSTBITE1); NADH dehydrogenase (ubiquinone) (153 aa)
     
   
  0.526
Bra018042
AT3G48680 (E=3e-135) GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase (256 aa)
       
 
  0.511
Bra037836
AT5G67590 (E=4e-034) FRO1 | FRO1 (FROSTBITE1); NADH dehydrogenase (ubiquinone) (94 aa)
     
   
  0.506
Bra038640
AT5G63510 (E=5e-129) GAMMA CAL1 | GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1); carbonate dehydratase (252 aa)
       
 
  0.482
Bra035840
AT3G48680 (E=4e-126) GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase (261 aa)
       
 
  0.482
Bra031117
AT2G20360 (E=3e-188) | binding / catalytic/ coenzyme binding (403 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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