STRINGSTRING
Bra001352 protein (Brassica rapa) - STRING interaction network
"Bra001352" - AT3G08600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001352AT3G08600 (E=3e-085) | unknown protein (307 aa)    
Predicted Functional Partners:
Bra021230
AT3G17180 (E=5e-251) scpl33 | scpl33 (serine carboxypeptidase-like 33); serine-type carboxypeptidase (474 aa)
           
  0.403
Bra016006
AT1G73260 (E=4e-043) | trypsin and protease inhibitor family protein / Kunitz family protein (209 aa)
           
  0.403
Bra016005
AT1G73260 (E=1e-048) | trypsin and protease inhibitor family protein / Kunitz family protein (209 aa)
           
  0.403
Bra016004
AT1G73260 (E=5e-045) | trypsin and protease inhibitor family protein / Kunitz family protein (211 aa)
           
  0.403
Bra016003
AT1G73260 (E=6e-049) | trypsin and protease inhibitor family protein / Kunitz family protein (212 aa)
           
  0.403
Bra016002
AT1G73260 (E=6e-049) | trypsin and protease inhibitor family protein / Kunitz family protein (214 aa)
           
  0.403
Bra010733
AT4G38650 (E=2e-280) | glycosyl hydrolase family 10 protein (564 aa)
           
  0.403
Bra008094
AT1G73260 (E=3e-047) | trypsin and protease inhibitor family protein / Kunitz family protein (212 aa)
           
  0.403
Bra008089
AT1G73260 (E=9e-045) | trypsin and protease inhibitor family protein / Kunitz family protein (204 aa)
           
  0.403
Bra008088
AT1G73260 (E=7e-037) | trypsin and protease inhibitor family protein / Kunitz family protein (213 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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