STRINGSTRING
Bra001356 protein (Brassica rapa) - STRING interaction network
"Bra001356" - AT3G10380 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001356AT3G10380 (E=0.0) SEC8, ATSEC8 | SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (1073 aa)    
Predicted Functional Partners:
Bra008893
AT5G12370 (E=0.0) SEC10 | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) (855 aa)
     
  0.972
Bra006157
AT5G12370 (E=0.0) SEC10 | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) (826 aa)
     
  0.972
Bra016113
AT1G71820 (E=5e-225) SEC6 | SEC6 (733 aa)
     
  0.971
Bra003912
AT1G71820 (E=5e-219) SEC6 | SEC6 (696 aa)
     
  0.969
Bra003706
AT1G76850 (E=0.0) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1082 aa)
     
  0.969
Bra008282
AT1G76850 (E=3e-291) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1147 aa)
     
  0.966
Bra008281
AT1G76850 (E=4e-017) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (414 aa)
     
  0.966
Bra037951
AT5G49830 (E=1e-212) | LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G10385.1); Has 257 Blast hits to 210 proteins in 83 species- Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 61; Plants - 56; Viruses - 2; Other Eukaryotes - 5 (source- NCBI BLink). (694 aa)
     
  0.960
Bra022506
AT5G49830 (E=0.0) | LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G10385.1); Has 257 Blast hits to 210 proteins in 83 species- Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 61; Plants - 56; Viruses - 2; Other Eukaryotes - 5 (source- NCBI BLink). (740 aa)
     
  0.960
Bra018442
AT1G10385 (E=0.0) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G49830.1); Has 304 Blast hits to 243 proteins in 98 species- Archae - 0; Bacteria - 22; Metazoa - 141; Fungi - 74; Plants - 62; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (756 aa)
     
  0.960
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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