STRINGSTRING
Bra001357 protein (Brassica rapa) - STRING interaction network
"Bra001357" - AT3G10390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001357AT3G10390 (E=0.0) FLD | FLD (FLOWERING LOCUS D); amine oxidase/ electron carrier/ oxidoreductase (920 aa)    
Predicted Functional Partners:
Bra035858
AT5G63110 (E=7e-251) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (470 aa)
     
  0.941
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.819
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
     
  0.819
Bra038607
AT5G63110 (E=5e-261) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (570 aa)
     
  0.814
HD1
AT4G38130 (E=8e-284) HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (502 aa)
     
  0.786
Bra019516
AT5G35600 (E=2e-137) HDA7 | HDA7 (histone deacetylase7); histone deacetylase (401 aa)
     
  0.786
Bra019424
AT3G44680 (E=5e-253) HDA9, HDA09 | HDA9 (HISTONE DEACETYLASE 9); histone deacetylase (426 aa)
     
  0.786
Bra018073
AT5G35600 (E=1e-142) HDA7 | HDA7 (histone deacetylase7); histone deacetylase (399 aa)
     
  0.786
Bra018072
AT5G35600 (E=9e-136) HDA7 | HDA7 (histone deacetylase7); histone deacetylase (442 aa)
     
  0.786
Bra014911
AT1G31660 (E=5e-177) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (707 aa)
         
  0.698
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]