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Bra001369 protein (Brassica rapa) - STRING interaction network
"Bra001369" - AT3G10572 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001369AT3G10572 (E=1e-125) | 3-phosphoinositide-dependent protein kinase-1, putative (330 aa)    
Predicted Functional Partners:
Bra032565
AT1G03000 (E=0.0) PEX6 | PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (1864 aa)
       
 
  0.938
Bra033364
AT1G03000 (E=2e-175) PEX6 | PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (1538 aa)
       
 
  0.754
Bra001257
AT3G07560 (E=9e-035) APM2, PEX13 | PEX13 (PEROXIN 13); protein binding (304 aa)
       
 
  0.669
Bra029657
AT3G07560 (E=7e-037) APM2, PEX13 | PEX13 (PEROXIN 13); protein binding (289 aa)
       
 
  0.591
Bra001079
AT3G03490 (E=8e-100) PEX19-1 | PEX19-1 (peroxin 19-1) (244 aa)
           
  0.480
Bra031314
AT3G21865 (E=6e-094) PEX22 | PEX22 (peroxin 22); protein binding (275 aa)
           
  0.472
Bra001848
AT3G21865 (E=2e-117) PEX22 | PEX22 (peroxin 22); protein binding (282 aa)
           
  0.472
Bra018814
AT1G49590 (E=6e-097) | formin-binding protein-related (246 aa)
           
  0.470
Bra023859
AT3G21865 (E=2e-088) PEX22 | PEX22 (peroxin 22); protein binding (264 aa)
           
  0.440
Bra039141
AT3G01150 (E=2e-209) PTB, ATPTB1, PTB1 | PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding (398 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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