STRINGSTRING
Bra001372 protein (Brassica rapa) - STRING interaction network
"Bra001372" - AT3G10650 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra001372AT3G10650 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleoporin-related (TAIR-AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species- Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source- NCBI BLink). (1333 aa)    
Predicted Functional Partners:
Bra027371
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1072 aa)
     
  0.978
Bra021532
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1069 aa)
     
  0.978
Bra013073
AT3G14120 (E=6e-167) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (473 aa)
     
  0.978
Bra010196
AT1G33410 (E=0.0) SAR1, NUP160, ATNUP160 | SAR1 (suppressor of auxin resistance1) (1927 aa)
     
  0.978
Bra021603
AT2G30050 (E=7e-170) | transducin family protein / WD-40 repeat family protein (692 aa)
     
  0.977
Bra011395
AT4G32910 (E=0.0) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nucleoporin, Nup85-like (InterPro-IPR011502); Has 161 Blast hits to 158 proteins in 60 species- Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 10; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (722 aa)
     
  0.977
Bra037036
AT4G32915 (E=1e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (142 aa)
     
  0.977
Bra034541
AT4G32915 (E=5e-054) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (145 aa)
     
  0.977
Bra025588
AT1G53000 (E=5e-026) | cytidylyltransferase family (134 aa)
     
  0.977
Bra039126
AT3G01340 (E=4e-173) | protein transport protein SEC13 family protein / WD-40 repeat family protein (302 aa)
       
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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