STRINGSTRING
Bra001383 protein (Brassica rapa) - STRING interaction network
"Bra001383" - AT3G10890 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra001383AT3G10890 (E=1e-174) | (1-4)-beta-mannan endohydrolase, putative (415 aa)    
Predicted Functional Partners:
Bra033312
AT1G02310 (E=1e-216) | glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative (411 aa)
   
   
 
0.404
Bra024990
AT5G46850 (E=2e-103) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- GPI anchor biosynthetic process; LOCATED IN- endoplasmic reticulum membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- PIG-X/PBN1 (InterPro-IPR013233); Has 52 Blast hits to 52 proteins in 24 species- Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (286 aa)
           
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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