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Bra001392 protein (Brassica rapa) - STRING interaction network
"Bra001392" - AT3G11170 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001392AT3G11170 (E=2e-220) FAD7, FADD | FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase (429 aa)    
Predicted Functional Partners:
Bra027203
AT3G15850 (E=1e-181) FAD5, FADB, JB67, ADS3 | FAD5 (FATTY ACID DESATURASE 5); 16-0 monogalactosyldiacylglycerol desaturase/ oxidoreductase (374 aa)
   
 
  0.706
Bra001609
AT3G15850 (E=4e-177) FAD5, FADB, JB67, ADS3 | FAD5 (FATTY ACID DESATURASE 5); 16-0 monogalactosyldiacylglycerol desaturase/ oxidoreductase (373 aa)
   
 
  0.706
Bra010264
AT4G30950 (E=3e-249) FAD6, FADC, SFD4 | FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase (446 aa)
   
 
0.551
Bra011235
AT4G30950 (E=2e-251) FAD6, FADC, SFD4 | FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase (443 aa)
   
 
0.551
Bra010265
AT4G30950 (E=7e-025) FAD6, FADC, SFD4 | FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase (134 aa)
   
          0.501
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
     
   
  0.481
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
     
   
  0.481
Bra026384
AT4G27030 (E=6e-134) | small conjugating protein ligase (298 aa)
           
  0.477
Bra010416
AT4G27030 (E=2e-135) | small conjugating protein ligase (295 aa)
           
  0.477
Bra004778
AT2G43710 (E=9e-214) SSI2, FAB2 | SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase ; Introduction of a cis double bond between carbons of the acyl chain (401 aa)
           
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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