STRINGSTRING
Bra001396 protein (Brassica rapa) - STRING interaction network
"Bra001396" - AT3G11230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001396AT3G11230 (E=6e-071) | yippee family protein (128 aa)    
Predicted Functional Partners:
Bra011793
AT4G37880 (E=1e-179) | protein binding / zinc ion binding (381 aa)
     
 
  0.908
Bra010618
AT4G37880 (E=5e-172) | protein binding / zinc ion binding (385 aa)
     
 
  0.908
Bra006028
AT5G09630 (E=5e-090) | protein binding / zinc ion binding (381 aa)
     
 
  0.908
Bra027514
AT5G43920 (E=1e-254) | transducin family protein / WD-40 repeat family protein (1112 aa)
     
 
  0.881
Bra038653
AT5G08560 (E=3e-091) | transducin family protein / WD-40 repeat family protein (479 aa)
     
 
  0.881
Bra029207
AT5G08560 (E=2e-038) | transducin family protein / WD-40 repeat family protein (272 aa)
     
 
  0.881
Bra009351
AT5G08560 (E=2e-272) | transducin family protein / WD-40 repeat family protein (580 aa)
     
 
  0.881
Bra006004
AT5G08560 (E=2e-199) | transducin family protein / WD-40 repeat family protein (371 aa)
     
 
  0.881
Bra034420
AT1G35470 (E=9e-208) | SPla/RYanodine receptor (SPRY) domain-containing protein (459 aa)
       
 
  0.773
Bra028085
AT1G35470 (E=6e-223) | SPla/RYanodine receptor (SPRY) domain-containing protein (469 aa)
       
 
  0.773
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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