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Bra001407 protein (Brassica rapa) - STRING interaction network
"Bra001407" - AT3G11530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001407AT3G11530 (E=7e-064) | vacuolar protein sorting 55 family protein / VPS55 family protein (138 aa)    
Predicted Functional Partners:
Bra040386
AT1G36980 (E=2e-077) | unknown protein (274 aa)
     
 
  0.941
Bra003466
AT3G61710 (E=8e-133) ATATG6 | autophagy protein Apg6 family (748 aa)
       
      0.612
Bra007167
AT3G55480 (E=0.0) | adaptin family protein (1000 aa)
       
      0.584
Bra035628
AT4G29390 (E=3e-024) | 40S ribosomal protein S30 (RPS30B) (62 aa)
           
  0.437
Bra031096
AT4G29390 (E=5e-021) | 40S ribosomal protein S30 (RPS30B) (80 aa)
           
  0.437
Bra024500
AT2G17640 (E=5e-159) ATSERAT3;1, SAT-106 | ATSERAT3;1; acetyltransferase/ serine O-acetyltransferase (318 aa)
           
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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