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Bra001418 protein (Brassica rapa) - STRING interaction network
"Bra001418" - AT3G11730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001418AT3G11730 (E=3e-106) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)    
Predicted Functional Partners:
Bra028434
AT5G39500 (E=0.0) | pattern formation protein, putative (1675 aa)
     
  0.984
Bra027464
AT5G54750 (E=4e-102) | transport protein particle (TRAPP) component Bet3, putative (186 aa)
     
  0.970
Bra002620
AT5G58750 (E=1e-201) | wound-responsive protein-related (386 aa)
       
 
  0.952
Bra024106
AT3G46060 (E=4e-013) ARA3 | ATRAB8A; GTP binding (138 aa)
     
 
  0.949
Bra004965
AT2G40380 (E=3e-069) PRA1.B2 | PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) (213 aa)
       
 
  0.939
Bra005924
AT5G07110 (E=1e-068) PRA1.B6 | PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) (218 aa)
       
 
  0.938
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
  0.931
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
       
  0.927
Bra002626
AT2G40116 (E=1e-167) | phosphoinositide-specific phospholipase C family protein (580 aa)
       
 
  0.912
Bra012646
AT4G17720 (E=8e-135) | RNA recognition motif (RRM)-containing protein (312 aa)
       
 
  0.911
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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