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Bra001425 protein (Brassica rapa) - STRING interaction network
"Bra001425" - AT3G11900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001425AT3G11900 (E=2e-227) ANT1 | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (426 aa)    
Predicted Functional Partners:
Bra020737
AT3G30390 (E=6e-206) | amino acid transporter family protein (459 aa)
     
 
  0.513
Bra017005
AT2G40420 (E=2e-186) | amino acid transporter family protein (444 aa)
     
 
  0.513
Bra007226
AT3G56200 (E=1e-156) | amino acid transporter family protein (418 aa)
     
 
  0.513
Bra007225
AT3G56200 (E=9e-212) | amino acid transporter family protein (434 aa)
     
 
  0.513
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
           
  0.485
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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