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Bra001429 protein (Brassica rapa) - STRING interaction network
"Bra001429" - AT3G11945 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001429AT3G11945 (E=2e-172) ATHST | homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase (383 aa)    
Predicted Functional Partners:
Bra015908
AT1G74470 (E=1e-235) | geranylgeranyl reductase (466 aa)
 
 
  0.832
Bra008152
AT1G74470 (E=1e-245) | geranylgeranyl reductase (466 aa)
 
 
  0.831
Bra039216
AT2G23800 (E=8e-157) GGPS2, GGPS5 | GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase (341 aa)
   
 
  0.789
Bra038544
AT2G18640 (E=5e-147) GGPS4 | GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase (367 aa)
   
 
  0.789
Bra035808
AT3G20160 (E=2e-139) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (350 aa)
   
 
  0.789
Bra035042
AT1G78510 (E=3e-183) SPS1 | SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase (419 aa)
   
 
  0.789
Bra032140
AT2G23800 (E=5e-158) GGPS2, GGPS5 | GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase (468 aa)
   
 
  0.789
Bra028096
AT2G18620 (E=2e-155) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (359 aa)
   
 
  0.789
Bra028094
AT2G18640 (E=8e-035) GGPS4 | GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase (147 aa)
   
 
  0.789
Bra027330
AT3G14530 (E=6e-155) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (358 aa)
   
 
  0.789
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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