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Bra001430 protein (Brassica rapa) - STRING interaction network
"Bra001430" - AT3G11950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001430AT3G11950 (E=2e-207) | prenyltransferase/ zinc ion binding (657 aa)    
Predicted Functional Partners:
Bra038834
AT2G18950 (E=2e-190) HPT1, TPT1, ATHPT, VTE2 | HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate phytyltransferase/ prenyltransferase (394 aa)
         
  0.898
Bra026006
AT1G17050 (E=2e-192) SPS2 | SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase (424 aa)
         
  0.890
Bra035042
AT1G78510 (E=3e-183) SPS1 | SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase (419 aa)
         
  0.888
Bra015908
AT1G74470 (E=1e-235) | geranylgeranyl reductase (466 aa)
         
  0.878
Bra008152
AT1G74470 (E=1e-245) | geranylgeranyl reductase (466 aa)
         
  0.878
Bra034798
AT3G11945 (E=5e-178) ATHST | homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase (1084 aa)
         
0.846
Bra001429
AT3G11945 (E=2e-172) ATHST | homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase (383 aa)
         
  0.629
Bra035503
AT1G32810 (E=2e-147) | protein binding / zinc ion binding (399 aa)
           
  0.414
Bra026973
AT1G62870 (E=0.0) | unknown protein (747 aa)
           
  0.410
Bra019761
AT1G12380 (E=0.0) | unknown protein (757 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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