STRINGSTRING
Bra001435 protein (Brassica rapa) - STRING interaction network
"Bra001435" - AT3G12010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001435AT3G12010 (E=7e-264) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s- Colon cancer-associated Mic1-like (InterPro-IPR009755); Has 126 Blast hits to 120 proteins in 58 species- Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 17 (source- NCBI BLink). (580 aa)    
Predicted Functional Partners:
Bra040069
AT4G32180 (E=0.0) ATPANK2 | ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase (899 aa)
     
      0.613
Bra011327
AT4G32180 (E=0.0) ATPANK2 | ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase (910 aa)
     
      0.613
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]