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Bra001436 protein (Brassica rapa) - STRING interaction network
"Bra001436" - AT3G12130 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001436AT3G12130 (E=1e-084) | KH domain-containing protein / zinc finger (CCCH type) family protein (235 aa)    
Predicted Functional Partners:
Bra022624
AT5G53060 (E=5e-213) | KH domain-containing protein (661 aa)
       
      0.752
Bra003085
AT5G53060 (E=1e-265) | KH domain-containing protein (639 aa)
       
      0.752
Bra005798
AT5G04280 (E=6e-101) | glycine-rich RNA-binding protein (306 aa)
       
      0.615
Bra028656
AT5G08420 (E=6e-116) | RNA binding ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (386 aa)
           
  0.483
Bra000542
AT2G26480 (E=7e-189) UGT76D1 | UGT76D1 (UDP-GLUCOSYL TRANSFERASE 76D1); UDP-glycosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (448 aa)
           
  0.483
Bra029177
AT5G51300 (E=1e-093) | splicing factor-related (385 aa)
           
  0.461
Bra037529
AT3G32940 (E=2e-232) | RNA binding (655 aa)
           
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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