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Bra001443 protein (Brassica rapa) - STRING interaction network
"Bra001443" - AT3G12250 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001443AT3G12250 (E=1e-141) TGA6, BZIP45 | TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (331 aa)    
Predicted Functional Partners:
Bra027690
AT1G64280 (E=2e-195) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (570 aa)
       
  0.980
Bra021949
AT5G45110 (E=1e-205) NPR3 | NPR3 (NPR1-LIKE PROTEIN 3); protein binding (562 aa)
       
  0.973
Bra013416
AT4G19660 (E=6e-250) NPR4 | NPR4 (NPR1-like protein 4); protein binding (588 aa)
       
  0.973
Bra013952
AT4G26120 (E=3e-229) | ankyrin repeat family protein / BTB/POZ domain-containing protein (605 aa)
       
  0.946
Bra010439
AT1G64280 (E=5e-190) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (962 aa)
       
  0.946
Bra016938
AT2G41370 (E=6e-228) BOP2 | BOP2 (BLADE ON PETIOLE2); protein binding (487 aa)
       
  0.903
Bra004617
AT2G41370 (E=2e-158) BOP2 | BOP2 (BLADE ON PETIOLE2); protein binding (317 aa)
       
  0.903
Bra030688
AT1G07530 (E=0.0) SCL14, ATGRAS2, GRAS2 | SCL14 (SCARECROW-LIKE 14); transcription factor (743 aa)
       
 
  0.621
Bra000980
AT3G02000 (E=3e-069) ROXY1 | ROXY1; disulfide oxidoreductase (137 aa)
       
 
  0.610
Bra000012
AT2G37650 (E=2e-295) | scarecrow-like transcription factor 9 (SCL9) (673 aa)
       
 
  0.610
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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