STRINGSTRING
Bra001444 protein (Brassica rapa) - STRING interaction network
"Bra001444" - AT3G12260 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001444AT3G12260 (E=5e-061) | complex 1 family protein / LVR family protein (133 aa)    
Predicted Functional Partners:
Bra034645
AT4G34700 (E=9e-040) | complex 1 family protein / LVR family protein (155 aa)
     
  0.998
Bra017671
AT4G34700 (E=2e-066) | complex 1 family protein / LVR family protein (117 aa)
     
  0.998
Bra011553
AT4G34700 (E=5e-065) | complex 1 family protein / LVR family protein (117 aa)
     
  0.998
Bra032017
AT3G03100 (E=2e-089) | NADH-ubiquinone oxidoreductase family protein (159 aa)
     
  0.998
Bra021373
AT3G03100 (E=3e-091) | NADH-ubiquinone oxidoreductase family protein (159 aa)
     
  0.998
Bra030577
AT2G33220 (E=2e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- photorespiration; LOCATED IN- mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- GRIM-19 (InterPro-IPR009346); BEST Arabidopsis thaliana protein match is- MEE4 (maternal effect embryo arrest 4) (TAIR-AT1G04630.1); Has 226 Blast hits to 226 proteins in 98 species- Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (143 aa)
     
  0.996
Bra030577.1-P
AT2G33220 (E=2e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- photorespiration; LOCATED IN- mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- GRIM-19 (InterPro-IPR009346); BEST Arabidopsis thaliana protein match is- MEE4 (maternal effect embryo arrest 4) (TAIR-AT1G04630.1); Has 226 Blast hits to 226 proteins in 98 species- Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (143 aa)
     
  0.996
Bra022932
AT2G33220 (E=2e-037) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- photorespiration; LOCATED IN- mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- GRIM-19 (InterPro-IPR009346); BEST Arabidopsis thaliana protein match is- MEE4 (maternal effect embryo arrest 4) (TAIR-AT1G04630.1); Has 226 Blast hits to 226 proteins in 98 species- Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (76 aa)
     
  0.996
Bra015336
AT2G33220 (E=2e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- photorespiration; LOCATED IN- mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- GRIM-19 (InterPro-IPR009346); BEST Arabidopsis thaliana protein match is- MEE4 (maternal effect embryo arrest 4) (TAIR-AT1G04630.1); Has 226 Blast hits to 226 proteins in 98 species- Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (143 aa)
     
  0.996
Bra029106
AT5G52840 (E=5e-090) | NADH-ubiquinone oxidoreductase-related (170 aa)
     
  0.994
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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