STRINGSTRING
Bra001446 protein (Brassica rapa) - STRING interaction network
"Bra001446" - AT3G12280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001446AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1027 aa)    
Predicted Functional Partners:
Bra005763
AT5G03415 (E=2e-129) DPB, ATDPB | DPB; protein binding / protein heterodimerization (365 aa)
     
  0.988
Bra009586
AT5G02470 (E=2e-129) DPA | DPA; transcription factor (290 aa)
     
  0.982
Bra005726
AT5G02470 (E=4e-127) DPA | DPA; transcription factor (283 aa)
     
  0.982
Bra023047
AT2G36010 (E=6e-196) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (469 aa)
     
  0.979
Bra017268
AT2G36010 (E=1e-193) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (487 aa)
     
  0.979
Bra006615
AT5G22220 (E=7e-192) E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor (463 aa)
     
  0.979
Bra005305
AT2G36010 (E=6e-192) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (481 aa)
     
  0.979
Bra002398
AT5G22220 (E=7e-111) E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor (443 aa)
     
  0.979
Bra014096
AT1G47870 (E=6e-122) E2FC, ATE2F2, ATE2FC | ATE2F2; DNA binding / protein heterodimerization/ transcription factor (367 aa)
     
  0.979
Bra040678
AT2G19520 (E=2e-267) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding (497 aa)
     
  0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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