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Bra001451 protein (Brassica rapa) - STRING interaction network
"Bra001451" - AT3G12400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001451AT3G12400 (E=2e-085) ELC, ATELC | ELC; ubiquitin binding (384 aa)    
Predicted Functional Partners:
Bra040688
AT3G53120 (E=3e-085) VPS37-1 | VPS37-1 (231 aa)
     
  0.979
Bra005253
AT2G36680 (E=1e-084) | LOCATED IN- ESCRT I complex; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Modifier of rudimentary, Modr (InterPro-IPR009851); BEST Arabidopsis thaliana protein match is- VPS37-1 (TAIR-AT3G53120.1); Has 348 Blast hits to 348 proteins in 85 species- Archae - 1; Bacteria - 4; Metazoa - 236; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 51 (source- NCBI BLink). (221 aa)
     
  0.979
Bra029546
AT4G05000 (E=9e-101) VPS28-2 | VPS28-2; transporter (209 aa)
     
  0.978
Bra020896
AT4G21560 (E=2e-094) VPS28-1 | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter (209 aa)
     
  0.978
Bra013536
AT4G21560 (E=1e-104) VPS28-1 | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter (209 aa)
     
  0.978
Bra034297
AT2G26210 (E=8e-059) | ankyrin repeat family protein (228 aa)
       
  0.975
Bra031406
AT1G61690 (E=2e-123) | phosphoinositide binding (913 aa)
       
  0.975
Bra031405
AT1G61690 (E=1e-052) | phosphoinositide binding (114 aa)
       
  0.975
Bra009411
AT5G04920 (E=9e-197) | vacuolar protein sorting 36 family protein / VPS36 family protein (436 aa)
       
  0.967
Bra026779
AT1G15130 (E=0.0) | hydroxyproline-rich glycoprotein family protein (852 aa)
     
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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