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Bra001452 protein (Brassica rapa) - STRING interaction network
"Bra001452" - AT3G12410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001452AT3G12410 (E=1e-018) | 3’-5’ exonuclease/ nucleic acid binding (62 aa)    
Predicted Functional Partners:
Bra030030
AT1G24290 (E=8e-240) | AAA-type ATPase family protein (519 aa)
       
 
  0.891
Bra026012
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding (577 aa)
     
 
  0.764
Bra014100
AT1G48050 (E=0.0) KU80, ATKU80 | KU80; double-stranded DNA binding / protein binding ; Single-stranded DNA-dependent ATP-dependent helicase (682 aa)
       
 
  0.674
Bra039413
AT3G05740 (E=4e-287) RECQI1 | RECQI1 (Arabidopsis RecQ helicase l1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (610 aa)
     
  0.663
Bra038422
AT1G31360 (E=0.0) RECQL2, ATRECQ2 | RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3’-5’ DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding (705 aa)
     
  0.663
Bra032447
AT1G05950 (E=5e-040) | unknown protein (208 aa)
     
  0.663
Bra032446
AT1G05950 (E=2e-036) | unknown protein (301 aa)
     
  0.663
Bra031741
AT1G10930 (E=0.0) ATSGS1, RECQ4A, ATRECQ4A | RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (1162 aa)
     
  0.663
Bra030065
AT1G27880 (E=0.0) | ATP-dependent DNA helicase, putative (972 aa)
     
  0.663
Bra027115
AT1G60930 (E=0.0) RECQL4B, ATRECQ4B | ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B); ATP binding / ATP-dependent helicase/ DNA helicase/ catalytic/ helicase/ nucleic acid binding / nucleotide binding (1159 aa)
     
  0.663
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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